File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4b/b8227eb742b3de328a3d6db8ccec59/.command.err
Size
1.3 KB
Attempt
mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-bporri0k because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-03 05:03:52,916 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-03 05:03:53,917 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-03 05:03:54,117 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-03 05:04:12,186 - cnv_pipe.batch.run_model - INFO - Loaded data with 71 samples
2026-06-03 05:04:12,440 - cnv_pipe.batch.run_model - INFO - Processing cluster 836 with 193 probes
2026-06-03 05:04:12,870 - cnv_pipe.batch.run_model.cluster836 - INFO - Child process started for cluster 836 with 193 probes
2026-06-03 05:07:41,710 - cnv_pipe.batch.run_model.cluster836 - INFO - Child process finished cluster 836. Wrote cluster_836_samples.csv and cluster_836_params.csv
2026-06-03 05:07:41,713 - cnv_pipe.batch.run_model - INFO - Cluster 836 finished in 209.27 seconds. Status: SUCCESS