File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/72/dfe7fb2bc781e3ca63b3f667267ee4/.command.err
Size
1.3 KB
Attempt
mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-7k6q4m05 because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-03 05:04:41,186 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-03 05:04:42,262 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-03 05:04:42,465 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-03 05:05:00,485 - cnv_pipe.batch.run_model - INFO - Loaded data with 71 samples
2026-06-03 05:05:00,761 - cnv_pipe.batch.run_model - INFO - Processing cluster 1074 with 194 probes
2026-06-03 05:05:01,233 - cnv_pipe.batch.run_model.cluster1074 - INFO - Child process started for cluster 1074 with 194 probes
2026-06-03 05:08:40,613 - cnv_pipe.batch.run_model.cluster1074 - INFO - Child process finished cluster 1074. Wrote cluster_1074_samples.csv and cluster_1074_params.csv
2026-06-03 05:08:40,616 - cnv_pipe.batch.run_model - INFO - Cluster 1074 finished in 219.85 seconds. Status: SUCCESS