File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cc/d6cbbda86b5e89627abab4f61ec9d4/.command.err
Size
1.3 KB
Attempt
mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-4capzrib because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-03 05:03:47,782 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-03 05:03:48,760 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-03 05:03:48,956 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-03 05:04:07,126 - cnv_pipe.batch.run_model - INFO - Loaded data with 71 samples
2026-06-03 05:04:07,402 - cnv_pipe.batch.run_model - INFO - Processing cluster 810 with 186 probes
2026-06-03 05:04:07,884 - cnv_pipe.batch.run_model.cluster810 - INFO - Child process started for cluster 810 with 186 probes
2026-06-03 05:07:31,229 - cnv_pipe.batch.run_model.cluster810 - INFO - Child process finished cluster 810. Wrote cluster_810_samples.csv and cluster_810_params.csv
2026-06-03 05:07:31,232 - cnv_pipe.batch.run_model - INFO - Cluster 810 finished in 203.83 seconds. Status: SUCCESS