Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/43/8940e298004d5cefac289b95ebb498/counts_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/43/8940e298004d5cefac289b95ebb498/ploidy_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/49/0736553abd3f1ae6189c25cf0a2077/clustered_panel.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/43/8940e298004d5cefac289b95ebb498/sample_metrics_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/93/47f3dc2be960ea062228e9c29a0405/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/93/47f3dc2be960ea062228e9c29a0405/.command.run
==> STAGING COMPLETE (6 inputs)

mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-c2nnvz5j because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-03 05:05:55,690 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-03 05:05:56,720 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-03 05:05:56,919 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-03 05:06:16,177 - cnv_pipe.batch.run_model - INFO - Loaded data with 71 samples
2026-06-03 05:06:16,464 - cnv_pipe.batch.run_model - INFO - Processing cluster 1189 with 195 probes
2026-06-03 05:06:16,964 - cnv_pipe.batch.run_model.cluster1189 - INFO - Child process started for cluster 1189 with 195 probes
2026-06-03 05:10:32,147 - cnv_pipe.batch.run_model.cluster1189 - INFO - Child process finished cluster 1189. Wrote cluster_1189_samples.csv and cluster_1189_params.csv
2026-06-03 05:10:32,149 - cnv_pipe.batch.run_model - INFO - Cluster 1189 finished in 255.68 seconds. Status: SUCCESS