Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/43/8940e298004d5cefac289b95ebb498/counts_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/43/8940e298004d5cefac289b95ebb498/ploidy_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/49/0736553abd3f1ae6189c25cf0a2077/clustered_panel.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/43/8940e298004d5cefac289b95ebb498/sample_metrics_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f5/8a5590043a81fdf146fede0d585bd8/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f5/8a5590043a81fdf146fede0d585bd8/.command.run
==> STAGING COMPLETE (6 inputs)

mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-ik1wur32 because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-03 05:05:00,376 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-03 05:05:01,175 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-03 05:05:01,343 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-03 05:05:17,279 - cnv_pipe.batch.run_model - INFO - Loaded data with 71 samples
2026-06-03 05:05:17,502 - cnv_pipe.batch.run_model - INFO - Processing cluster 1005 with 197 probes
2026-06-03 05:05:17,887 - cnv_pipe.batch.run_model.cluster1005 - INFO - Child process started for cluster 1005 with 197 probes
2026-06-03 05:08:47,665 - cnv_pipe.batch.run_model.cluster1005 - INFO - Child process finished cluster 1005. Wrote cluster_1005_samples.csv and cluster_1005_params.csv
2026-06-03 05:08:47,669 - cnv_pipe.batch.run_model - INFO - Cluster 1005 finished in 210.17 seconds. Status: SUCCESS