Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/43/8940e298004d5cefac289b95ebb498/counts_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/43/8940e298004d5cefac289b95ebb498/ploidy_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/49/0736553abd3f1ae6189c25cf0a2077/clustered_panel.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/43/8940e298004d5cefac289b95ebb498/sample_metrics_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d7/186f0ec551ef1f17e1b05744276fa4/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d7/186f0ec551ef1f17e1b05744276fa4/.command.run
==> STAGING COMPLETE (6 inputs)

mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-art2a8ex because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-03 05:04:40,867 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-03 05:04:41,673 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-03 05:04:41,849 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-03 05:04:59,407 - cnv_pipe.batch.run_model - INFO - Loaded data with 71 samples
2026-06-03 05:04:59,660 - cnv_pipe.batch.run_model - INFO - Processing cluster 805 with 192 probes
2026-06-03 05:05:00,038 - cnv_pipe.batch.run_model.cluster805 - INFO - Child process started for cluster 805 with 192 probes
2026-06-03 05:08:38,639 - cnv_pipe.batch.run_model.cluster805 - INFO - Child process finished cluster 805. Wrote cluster_805_samples.csv and cluster_805_params.csv
2026-06-03 05:08:38,642 - cnv_pipe.batch.run_model - INFO - Cluster 805 finished in 218.98 seconds. Status: SUCCESS