File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/93/308e9b11cf1fcbf44adf3bf9ef26f5/.command.err
Size
1.3 KB
Attempt
mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-kzpel68o because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-03 05:03:05,757 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-03 05:03:06,718 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-03 05:03:06,911 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-03 05:03:24,752 - cnv_pipe.batch.run_model - INFO - Loaded data with 71 samples
2026-06-03 05:03:25,037 - cnv_pipe.batch.run_model - INFO - Processing cluster 565 with 184 probes
2026-06-03 05:03:25,519 - cnv_pipe.batch.run_model.cluster565 - INFO - Child process started for cluster 565 with 184 probes
2026-06-03 05:07:01,736 - cnv_pipe.batch.run_model.cluster565 - INFO - Child process finished cluster 565. Wrote cluster_565_samples.csv and cluster_565_params.csv
2026-06-03 05:07:01,738 - cnv_pipe.batch.run_model - INFO - Cluster 565 finished in 216.70 seconds. Status: SUCCESS