File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/80/b2372c96315dd7d62a46ac31c39318/.command.err
Size
1.3 KB
Attempt
mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-fh5ret0e because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-03 05:04:56,785 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-03 05:04:57,743 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-03 05:04:57,929 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-03 05:05:16,342 - cnv_pipe.batch.run_model - INFO - Loaded data with 71 samples
2026-06-03 05:05:16,651 - cnv_pipe.batch.run_model - INFO - Processing cluster 1170 with 160 probes
2026-06-03 05:05:17,131 - cnv_pipe.batch.run_model.cluster1170 - INFO - Child process started for cluster 1170 with 160 probes
2026-06-03 05:08:24,420 - cnv_pipe.batch.run_model.cluster1170 - INFO - Child process finished cluster 1170. Wrote cluster_1170_samples.csv and cluster_1170_params.csv
2026-06-03 05:08:24,423 - cnv_pipe.batch.run_model - INFO - Cluster 1170 finished in 187.77 seconds. Status: SUCCESS