Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/43/8940e298004d5cefac289b95ebb498/counts_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/43/8940e298004d5cefac289b95ebb498/ploidy_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/49/0736553abd3f1ae6189c25cf0a2077/clustered_panel.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/43/8940e298004d5cefac289b95ebb498/sample_metrics_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e7/199e83fdc09eaae89f68682a16e6df/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e7/199e83fdc09eaae89f68682a16e6df/.command.run
==> STAGING COMPLETE (6 inputs)

mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-xtnt2cxt because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-03 05:03:02,900 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-03 05:03:03,874 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-03 05:03:04,065 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-03 05:03:22,061 - cnv_pipe.batch.run_model - INFO - Loaded data with 71 samples
2026-06-03 05:03:22,154 - cnv_pipe.batch.run_model - INFO - Processing cluster 549 with 181 probes
2026-06-03 05:03:22,577 - cnv_pipe.batch.run_model.cluster549 - INFO - Child process started for cluster 549 with 181 probes
2026-06-03 05:06:52,731 - cnv_pipe.batch.run_model.cluster549 - INFO - Child process finished cluster 549. Wrote cluster_549_samples.csv and cluster_549_params.csv
2026-06-03 05:06:52,733 - cnv_pipe.batch.run_model - INFO - Cluster 549 finished in 210.58 seconds. Status: SUCCESS