Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cc/b90c522843ecb8d4268523753f5af4/counts_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cc/b90c522843ecb8d4268523753f5af4/ploidy_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1d/70f25995e6b00be0442e8c41ed3aae/clustered_panel.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cc/b90c522843ecb8d4268523753f5af4/sample_metrics_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/da/b910d7a78958bcddec29dfa08323a2/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/da/b910d7a78958bcddec29dfa08323a2/.command.run
==> STAGING COMPLETE (6 inputs)

mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-7ph_djzl because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-03 05:06:15,966 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-03 05:06:17,705 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-03 05:06:18,051 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-03 05:06:48,273 - cnv_pipe.batch.run_model - INFO - Loaded data with 71 samples
2026-06-03 05:06:48,433 - cnv_pipe.batch.run_model - INFO - Processing cluster 1043 with 198 probes
2026-06-03 05:06:49,282 - cnv_pipe.batch.run_model.cluster1043 - INFO - Child process started for cluster 1043 with 198 probes
2026-06-03 05:11:55,976 - cnv_pipe.batch.run_model.cluster1043 - INFO - Child process finished cluster 1043. Wrote cluster_1043_samples.csv and cluster_1043_params.csv
2026-06-03 05:11:55,978 - cnv_pipe.batch.run_model - INFO - Cluster 1043 finished in 307.55 seconds. Status: SUCCESS