File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/de/65d41084fa8f1a1a03e1d8ca273086/.command.err
Size
1.3 KB
Attempt
mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-7pkvs6kj because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-03 05:06:08,959 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-03 05:06:09,769 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-03 05:06:09,936 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-03 05:06:25,607 - cnv_pipe.batch.run_model - INFO - Loaded data with 71 samples
2026-06-03 05:06:25,818 - cnv_pipe.batch.run_model - INFO - Processing cluster 921 with 149 probes
2026-06-03 05:06:26,252 - cnv_pipe.batch.run_model.cluster921 - INFO - Child process started for cluster 921 with 149 probes
2026-06-03 05:09:19,608 - cnv_pipe.batch.run_model.cluster921 - INFO - Child process finished cluster 921. Wrote cluster_921_samples.csv and cluster_921_params.csv
2026-06-03 05:09:19,611 - cnv_pipe.batch.run_model - INFO - Cluster 921 finished in 173.79 seconds. Status: SUCCESS