Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cc/b90c522843ecb8d4268523753f5af4/counts_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cc/b90c522843ecb8d4268523753f5af4/ploidy_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cc/b90c522843ecb8d4268523753f5af4/sample_metrics_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1d/70f25995e6b00be0442e8c41ed3aae/clustered_panel.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5d/37b17f59add43e87457a30a08b188f/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5d/37b17f59add43e87457a30a08b188f/.command.run
==> STAGING COMPLETE (6 inputs)

mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-uek6_r0z because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-03 05:04:56,878 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-03 05:04:57,690 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-03 05:04:57,861 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-03 05:05:14,661 - cnv_pipe.batch.run_model - INFO - Loaded data with 71 samples
2026-06-03 05:05:14,927 - cnv_pipe.batch.run_model - INFO - Processing cluster 693 with 200 probes
2026-06-03 05:05:15,329 - cnv_pipe.batch.run_model.cluster693 - INFO - Child process started for cluster 693 with 200 probes
2026-06-03 05:08:47,189 - cnv_pipe.batch.run_model.cluster693 - INFO - Child process finished cluster 693. Wrote cluster_693_samples.csv and cluster_693_params.csv
2026-06-03 05:08:47,192 - cnv_pipe.batch.run_model - INFO - Cluster 693 finished in 212.27 seconds. Status: SUCCESS