Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cc/b90c522843ecb8d4268523753f5af4/counts_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cc/b90c522843ecb8d4268523753f5af4/ploidy_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1d/70f25995e6b00be0442e8c41ed3aae/clustered_panel.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cc/b90c522843ecb8d4268523753f5af4/sample_metrics_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5c/d3abd46721600d3f6c44eb17e1623a/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5c/d3abd46721600d3f6c44eb17e1623a/.command.run
==> STAGING COMPLETE (6 inputs)

mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-auk_njl9 because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-03 05:05:58,034 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-03 05:05:59,020 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-03 05:05:59,216 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-03 05:06:18,775 - cnv_pipe.batch.run_model - INFO - Loaded data with 71 samples
2026-06-03 05:06:18,889 - cnv_pipe.batch.run_model - INFO - Processing cluster 1095 with 195 probes
2026-06-03 05:06:19,369 - cnv_pipe.batch.run_model.cluster1095 - INFO - Child process started for cluster 1095 with 195 probes
2026-06-03 05:09:59,879 - cnv_pipe.batch.run_model.cluster1095 - INFO - Child process finished cluster 1095. Wrote cluster_1095_samples.csv and cluster_1095_params.csv
2026-06-03 05:09:59,882 - cnv_pipe.batch.run_model - INFO - Cluster 1095 finished in 220.99 seconds. Status: SUCCESS