File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/03/7cb150066b12c1800319f1c2eb6f60/.command.err
Size
1.3 KB
Attempt
mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-dea853o7 because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-03 05:05:16,488 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-03 05:05:17,305 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-03 05:05:17,479 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-03 05:05:34,013 - cnv_pipe.batch.run_model - INFO - Loaded data with 71 samples
2026-06-03 05:05:34,111 - cnv_pipe.batch.run_model - INFO - Processing cluster 834 with 190 probes
2026-06-03 05:05:34,524 - cnv_pipe.batch.run_model.cluster834 - INFO - Child process started for cluster 834 with 190 probes
2026-06-03 05:08:59,878 - cnv_pipe.batch.run_model.cluster834 - INFO - Child process finished cluster 834. Wrote cluster_834_samples.csv and cluster_834_params.csv
2026-06-03 05:08:59,880 - cnv_pipe.batch.run_model - INFO - Cluster 834 finished in 205.77 seconds. Status: SUCCESS