Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cc/b90c522843ecb8d4268523753f5af4/ploidy_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cc/b90c522843ecb8d4268523753f5af4/counts_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1d/70f25995e6b00be0442e8c41ed3aae/clustered_panel.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cc/b90c522843ecb8d4268523753f5af4/sample_metrics_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ec/e2a7ce313741d3cf6f37827aca19df/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ec/e2a7ce313741d3cf6f37827aca19df/.command.run
==> STAGING COMPLETE (6 inputs)

mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-yyw__hif because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-03 05:06:34,827 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-03 05:06:35,623 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-03 05:06:35,791 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-03 05:06:52,469 - cnv_pipe.batch.run_model - INFO - Loaded data with 71 samples
2026-06-03 05:06:52,734 - cnv_pipe.batch.run_model - INFO - Processing cluster 1075 with 122 probes
2026-06-03 05:06:53,121 - cnv_pipe.batch.run_model.cluster1075 - INFO - Child process started for cluster 1075 with 122 probes
2026-06-03 05:09:07,579 - cnv_pipe.batch.run_model.cluster1075 - INFO - Child process finished cluster 1075. Wrote cluster_1075_samples.csv and cluster_1075_params.csv
2026-06-03 05:09:07,580 - cnv_pipe.batch.run_model - INFO - Cluster 1075 finished in 134.85 seconds. Status: SUCCESS