File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fb/a2688ac858dfc09a4f21c92c240563/.command.err
Size
1.3 KB
Attempt
mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-82y4074p because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-03 05:05:14,733 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-03 05:05:15,629 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-03 05:05:15,807 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-03 05:05:33,009 - cnv_pipe.batch.run_model - INFO - Loaded data with 71 samples
2026-06-03 05:05:33,101 - cnv_pipe.batch.run_model - INFO - Processing cluster 795 with 149 probes
2026-06-03 05:05:33,667 - cnv_pipe.batch.run_model.cluster795 - INFO - Child process started for cluster 795 with 149 probes
2026-06-03 05:08:29,556 - cnv_pipe.batch.run_model.cluster795 - INFO - Child process finished cluster 795. Wrote cluster_795_samples.csv and cluster_795_params.csv
2026-06-03 05:08:29,559 - cnv_pipe.batch.run_model - INFO - Cluster 795 finished in 176.46 seconds. Status: SUCCESS