Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cc/b90c522843ecb8d4268523753f5af4/counts_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cc/b90c522843ecb8d4268523753f5af4/ploidy_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1d/70f25995e6b00be0442e8c41ed3aae/clustered_panel.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cc/b90c522843ecb8d4268523753f5af4/sample_metrics_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/df/cf979ab651fc41b5831b1f1ee2e0df/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/df/cf979ab651fc41b5831b1f1ee2e0df/.command.run
==> STAGING COMPLETE (6 inputs)

mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-zsc6jh1x because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-03 05:05:59,542 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-03 05:06:00,560 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-03 05:06:00,748 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-03 05:06:19,956 - cnv_pipe.batch.run_model - INFO - Loaded data with 71 samples
2026-06-03 05:06:20,275 - cnv_pipe.batch.run_model - INFO - Processing cluster 1107 with 185 probes
2026-06-03 05:06:20,748 - cnv_pipe.batch.run_model.cluster1107 - INFO - Child process started for cluster 1107 with 185 probes
2026-06-03 05:09:45,031 - cnv_pipe.batch.run_model.cluster1107 - INFO - Child process finished cluster 1107. Wrote cluster_1107_samples.csv and cluster_1107_params.csv
2026-06-03 05:09:45,034 - cnv_pipe.batch.run_model - INFO - Cluster 1107 finished in 204.76 seconds. Status: SUCCESS