Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cc/b90c522843ecb8d4268523753f5af4/counts_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cc/b90c522843ecb8d4268523753f5af4/ploidy_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1d/70f25995e6b00be0442e8c41ed3aae/clustered_panel.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cc/b90c522843ecb8d4268523753f5af4/sample_metrics_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b5/c95b007493d50c2cc681d9bc0c0466/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b5/c95b007493d50c2cc681d9bc0c0466/.command.run
==> STAGING COMPLETE (6 inputs)

mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-9vibijqb because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-03 05:06:36,945 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-03 05:06:37,951 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-03 05:06:38,161 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-03 05:06:57,147 - cnv_pipe.batch.run_model - INFO - Loaded data with 71 samples
2026-06-03 05:06:57,255 - cnv_pipe.batch.run_model - INFO - Processing cluster 1144 with 194 probes
2026-06-03 05:06:57,917 - cnv_pipe.batch.run_model.cluster1144 - INFO - Child process started for cluster 1144 with 194 probes
2026-06-03 05:10:24,818 - cnv_pipe.batch.run_model.cluster1144 - INFO - Child process finished cluster 1144. Wrote cluster_1144_samples.csv and cluster_1144_params.csv
2026-06-03 05:10:24,821 - cnv_pipe.batch.run_model - INFO - Cluster 1144 finished in 207.57 seconds. Status: SUCCESS