File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ac/e81a65ec1574eaba9fcfcd9fcae335/.command.err
Size
1.3 KB
Attempt
mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-2g22cgss because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-03 05:04:38,269 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-03 05:04:39,083 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-03 05:04:39,291 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-03 05:04:55,749 - cnv_pipe.batch.run_model - INFO - Loaded data with 66 samples
2026-06-03 05:04:55,979 - cnv_pipe.batch.run_model - INFO - Processing cluster 1197 with 146 probes
2026-06-03 05:04:56,389 - cnv_pipe.batch.run_model.cluster1197 - INFO - Child process started for cluster 1197 with 146 probes
2026-06-03 05:07:30,582 - cnv_pipe.batch.run_model.cluster1197 - INFO - Child process finished cluster 1197. Wrote cluster_1197_samples.csv and cluster_1197_params.csv
2026-06-03 05:07:30,585 - cnv_pipe.batch.run_model - INFO - Cluster 1197 finished in 154.61 seconds. Status: SUCCESS