File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bd/3309500db6a9f4c1f2d3d74cc15b9d/.command.err
Size
1.3 KB
Attempt
mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-8k6afsmk because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-03 05:03:22,707 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-03 05:03:23,695 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-03 05:03:23,885 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-03 05:03:41,376 - cnv_pipe.batch.run_model - INFO - Loaded data with 66 samples
2026-06-03 05:03:41,470 - cnv_pipe.batch.run_model - INFO - Processing cluster 893 with 200 probes
2026-06-03 05:03:41,931 - cnv_pipe.batch.run_model.cluster893 - INFO - Child process started for cluster 893 with 200 probes
2026-06-03 05:07:09,320 - cnv_pipe.batch.run_model.cluster893 - INFO - Child process finished cluster 893. Wrote cluster_893_samples.csv and cluster_893_params.csv
2026-06-03 05:07:09,324 - cnv_pipe.batch.run_model - INFO - Cluster 893 finished in 207.85 seconds. Status: SUCCESS