File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/17/dc9b717de5510e7b7b86ea4ebc571d/.command.err
Size
1.3 KB
Attempt
mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-ybf3llgy because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-03 05:03:31,142 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-03 05:03:31,977 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-03 05:03:32,149 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-03 05:03:46,549 - cnv_pipe.batch.run_model - INFO - Loaded data with 66 samples
2026-06-03 05:03:46,722 - cnv_pipe.batch.run_model - INFO - Processing cluster 949 with 200 probes
2026-06-03 05:03:47,088 - cnv_pipe.batch.run_model.cluster949 - INFO - Child process started for cluster 949 with 200 probes
2026-06-03 05:06:55,473 - cnv_pipe.batch.run_model.cluster949 - INFO - Child process finished cluster 949. Wrote cluster_949_samples.csv and cluster_949_params.csv
2026-06-03 05:06:55,475 - cnv_pipe.batch.run_model - INFO - Cluster 949 finished in 188.75 seconds. Status: SUCCESS