Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f4/03d9bd41739068b76caeb84b6843ad/counts_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f4/03d9bd41739068b76caeb84b6843ad/ploidy_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/90/0abbc905604638cc0f1c9bc2c6f05f/clustered_panel.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f4/03d9bd41739068b76caeb84b6843ad/sample_metrics_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f3/e35cb439ea51d19369523e65872bd0/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f3/e35cb439ea51d19369523e65872bd0/.command.run
==> STAGING COMPLETE (6 inputs)

mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-ehlcqe1p because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-03 05:05:48,897 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-03 05:05:49,893 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-03 05:05:50,091 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-03 05:06:08,591 - cnv_pipe.batch.run_model - INFO - Loaded data with 66 samples
2026-06-03 05:06:08,872 - cnv_pipe.batch.run_model - INFO - Processing cluster 992 with 187 probes
2026-06-03 05:06:09,357 - cnv_pipe.batch.run_model.cluster992 - INFO - Child process started for cluster 992 with 187 probes
2026-06-03 05:09:41,133 - cnv_pipe.batch.run_model.cluster992 - INFO - Child process finished cluster 992. Wrote cluster_992_samples.csv and cluster_992_params.csv
2026-06-03 05:09:41,136 - cnv_pipe.batch.run_model - INFO - Cluster 992 finished in 212.26 seconds. Status: SUCCESS