File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5e/c5c9150c10996ba6eb23a16d845dd8/.command.err
Size
1.3 KB
Attempt
mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-d976jz72 because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-03 05:06:02,660 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-03 05:06:03,474 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-03 05:06:03,651 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-03 05:06:19,429 - cnv_pipe.batch.run_model - INFO - Loaded data with 66 samples
2026-06-03 05:06:19,685 - cnv_pipe.batch.run_model - INFO - Processing cluster 1030 with 186 probes
2026-06-03 05:06:20,078 - cnv_pipe.batch.run_model.cluster1030 - INFO - Child process started for cluster 1030 with 186 probes
2026-06-03 05:09:43,492 - cnv_pipe.batch.run_model.cluster1030 - INFO - Child process finished cluster 1030. Wrote cluster_1030_samples.csv and cluster_1030_params.csv
2026-06-03 05:09:43,494 - cnv_pipe.batch.run_model - INFO - Cluster 1030 finished in 203.81 seconds. Status: SUCCESS