Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f4/03d9bd41739068b76caeb84b6843ad/counts_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f4/03d9bd41739068b76caeb84b6843ad/ploidy_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/90/0abbc905604638cc0f1c9bc2c6f05f/clustered_panel.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f4/03d9bd41739068b76caeb84b6843ad/sample_metrics_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ff/c4c166a4ae25f0d2fc8d9e5777ffac/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ff/c4c166a4ae25f0d2fc8d9e5777ffac/.command.run
==> STAGING COMPLETE (6 inputs)

mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-llzqj22t because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-03 05:03:07,157 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-03 05:03:08,178 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-03 05:03:08,377 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-03 05:03:25,501 - cnv_pipe.batch.run_model - INFO - Loaded data with 66 samples
2026-06-03 05:03:25,757 - cnv_pipe.batch.run_model - INFO - Processing cluster 810 with 186 probes
2026-06-03 05:03:26,215 - cnv_pipe.batch.run_model.cluster810 - INFO - Child process started for cluster 810 with 186 probes
2026-06-03 05:06:50,481 - cnv_pipe.batch.run_model.cluster810 - INFO - Child process finished cluster 810. Wrote cluster_810_samples.csv and cluster_810_params.csv
2026-06-03 05:06:50,484 - cnv_pipe.batch.run_model - INFO - Cluster 810 finished in 204.73 seconds. Status: SUCCESS