Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f4/03d9bd41739068b76caeb84b6843ad/counts_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f4/03d9bd41739068b76caeb84b6843ad/ploidy_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/90/0abbc905604638cc0f1c9bc2c6f05f/clustered_panel.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f4/03d9bd41739068b76caeb84b6843ad/sample_metrics_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/db/56ebf8b4e909e50a65df9d8f3d923f/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/db/56ebf8b4e909e50a65df9d8f3d923f/.command.run
==> STAGING COMPLETE (6 inputs)

mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-o5o_c178 because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-03 05:04:41,197 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-03 05:04:41,992 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-03 05:04:42,166 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-03 05:04:58,926 - cnv_pipe.batch.run_model - INFO - Loaded data with 66 samples
2026-06-03 05:04:59,160 - cnv_pipe.batch.run_model - INFO - Processing cluster 1013 with 175 probes
2026-06-03 05:04:59,543 - cnv_pipe.batch.run_model.cluster1013 - INFO - Child process started for cluster 1013 with 175 probes
2026-06-03 05:08:06,978 - cnv_pipe.batch.run_model.cluster1013 - INFO - Child process finished cluster 1013. Wrote cluster_1013_samples.csv and cluster_1013_params.csv
2026-06-03 05:08:06,982 - cnv_pipe.batch.run_model - INFO - Cluster 1013 finished in 187.82 seconds. Status: SUCCESS