File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a2/5a412ebe167549d2d376860d7f23ec/.command.err
Size
1.3 KB
Attempt
mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-roqjiqk5 because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-03 05:27:14,923 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-03 05:27:15,738 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-03 05:27:15,910 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-03 05:28:09,193 - cnv_pipe.batch.run_model - INFO - Loaded data with 236 samples
2026-06-03 05:28:09,494 - cnv_pipe.batch.run_model - INFO - Processing cluster 896 with 192 probes
2026-06-03 05:28:09,874 - cnv_pipe.batch.run_model.cluster896 - INFO - Child process started for cluster 896 with 192 probes
2026-06-03 05:34:27,915 - cnv_pipe.batch.run_model.cluster896 - INFO - Child process finished cluster 896. Wrote cluster_896_samples.csv and cluster_896_params.csv
2026-06-03 05:34:27,918 - cnv_pipe.batch.run_model - INFO - Cluster 896 finished in 378.42 seconds. Status: SUCCESS