File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/23/d8e3b377e40127fe4acc58a8646988/.command.err
Size
1.3 KB
Attempt
mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-f8a2_1ad because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-03 05:26:59,875 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-03 05:27:00,701 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-03 05:27:00,871 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-03 05:27:55,237 - cnv_pipe.batch.run_model - INFO - Loaded data with 236 samples
2026-06-03 05:27:55,403 - cnv_pipe.batch.run_model - INFO - Processing cluster 848 with 107 probes
2026-06-03 05:27:55,928 - cnv_pipe.batch.run_model.cluster848 - INFO - Child process started for cluster 848 with 107 probes
2026-06-03 05:31:32,518 - cnv_pipe.batch.run_model.cluster848 - INFO - Child process finished cluster 848. Wrote cluster_848_samples.csv and cluster_848_params.csv
2026-06-03 05:31:32,520 - cnv_pipe.batch.run_model - INFO - Cluster 848 finished in 217.12 seconds. Status: SUCCESS