mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-ov03hvws because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-03 05:24:41,046 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-03 05:24:41,858 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-03 05:24:42,029 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-03 05:25:33,616 - cnv_pipe.batch.run_model - INFO - Loaded data with 236 samples
2026-06-03 05:25:33,874 - cnv_pipe.batch.run_model - INFO - Processing cluster 499 with 170 probes
2026-06-03 05:25:34,243 - cnv_pipe.batch.run_model.cluster499 - INFO - Child process started for cluster 499 with 170 probes
2026-06-03 05:30:12,431 - cnv_pipe.batch.run_model.cluster499 - INFO - Child process finished cluster 499. Wrote cluster_499_samples.csv and cluster_499_params.csv
2026-06-03 05:30:12,433 - cnv_pipe.batch.run_model - INFO - Cluster 499 finished in 278.56 seconds. Status: SUCCESS