Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4f/da1360e1d533b3c711d4b906ac3918/counts_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/35/0beda2781c070bcd33e32f334984f5/clustered_panel.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4f/da1360e1d533b3c711d4b906ac3918/ploidy_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4f/da1360e1d533b3c711d4b906ac3918/sample_metrics_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/37/db22622fd9bea2840e191a6bd3c508/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/37/db22622fd9bea2840e191a6bd3c508/.command.run
==> STAGING COMPLETE (6 inputs)

mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-r1njxbb2 because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-03 05:26:05,829 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-03 05:26:06,647 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-03 05:26:06,816 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-03 05:26:59,349 - cnv_pipe.batch.run_model - INFO - Loaded data with 236 samples
2026-06-03 05:26:59,489 - cnv_pipe.batch.run_model - INFO - Processing cluster 686 with 196 probes
2026-06-03 05:27:00,014 - cnv_pipe.batch.run_model.cluster686 - INFO - Child process started for cluster 686 with 196 probes
2026-06-03 05:32:33,929 - cnv_pipe.batch.run_model.cluster686 - INFO - Child process finished cluster 686. Wrote cluster_686_samples.csv and cluster_686_params.csv
2026-06-03 05:32:33,931 - cnv_pipe.batch.run_model - INFO - Cluster 686 finished in 334.44 seconds. Status: SUCCESS