File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/05/d36a0fbf680b856c6e35b9947144e3/.command.err
Size
1.3 KB
Attempt
mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-td_f_278 because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-03 05:25:27,947 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-03 05:25:28,743 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-03 05:25:28,906 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-03 05:26:20,913 - cnv_pipe.batch.run_model - INFO - Loaded data with 236 samples
2026-06-03 05:26:21,190 - cnv_pipe.batch.run_model - INFO - Processing cluster 589 with 183 probes
2026-06-03 05:26:21,563 - cnv_pipe.batch.run_model.cluster589 - INFO - Child process started for cluster 589 with 183 probes
2026-06-03 05:31:42,862 - cnv_pipe.batch.run_model.cluster589 - INFO - Child process finished cluster 589. Wrote cluster_589_samples.csv and cluster_589_params.csv
2026-06-03 05:31:42,864 - cnv_pipe.batch.run_model - INFO - Cluster 589 finished in 321.67 seconds. Status: SUCCESS