File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/26/0f7f8b7c00c54d3c02e26cc6ed62fd/.command.err
Size
1.3 KB
Attempt
mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-brmhhhzb because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-03 05:27:14,968 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-03 05:27:15,844 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-03 05:27:16,019 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-03 05:28:09,265 - cnv_pipe.batch.run_model - INFO - Loaded data with 236 samples
2026-06-03 05:28:09,525 - cnv_pipe.batch.run_model - INFO - Processing cluster 891 with 151 probes
2026-06-03 05:28:09,914 - cnv_pipe.batch.run_model.cluster891 - INFO - Child process started for cluster 891 with 151 probes
2026-06-03 05:33:10,683 - cnv_pipe.batch.run_model.cluster891 - INFO - Child process finished cluster 891. Wrote cluster_891_samples.csv and cluster_891_params.csv
2026-06-03 05:33:10,685 - cnv_pipe.batch.run_model - INFO - Cluster 891 finished in 301.16 seconds. Status: SUCCESS