mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-cefco72p because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-03 05:21:45,607 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-03 05:21:46,375 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-03 05:21:46,537 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-03 05:22:34,477 - cnv_pipe.batch.run_model - INFO - Loaded data with 236 samples
2026-06-03 05:22:34,720 - cnv_pipe.batch.run_model - INFO - Processing cluster 61 with 160 probes
2026-06-03 05:22:35,078 - cnv_pipe.batch.run_model.cluster61 - INFO - Child process started for cluster 61 with 160 probes
2026-06-03 05:26:17,023 - cnv_pipe.batch.run_model.cluster61 - INFO - Child process finished cluster 61. Wrote cluster_61_samples.csv and cluster_61_params.csv
2026-06-03 05:26:17,025 - cnv_pipe.batch.run_model - INFO - Cluster 61 finished in 222.30 seconds. Status: SUCCESS