mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-onmuqspe because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-03 05:24:40,320 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-03 05:24:41,115 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-03 05:24:41,281 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-03 05:25:30,917 - cnv_pipe.batch.run_model - INFO - Loaded data with 236 samples
2026-06-03 05:25:31,060 - cnv_pipe.batch.run_model - INFO - Processing cluster 500 with 184 probes
2026-06-03 05:25:31,434 - cnv_pipe.batch.run_model.cluster500 - INFO - Child process started for cluster 500 with 184 probes
2026-06-03 05:30:30,650 - cnv_pipe.batch.run_model.cluster500 - INFO - Child process finished cluster 500. Wrote cluster_500_samples.csv and cluster_500_params.csv
2026-06-03 05:30:30,653 - cnv_pipe.batch.run_model - INFO - Cluster 500 finished in 299.59 seconds. Status: SUCCESS