.command.sh - Workdir - GERMLINE_CNV:AggregateBatchPerSampleData (1136_5X1-N1-BDNA-1_A23NLN3LT4_1)

File Info

Filename: .command.sh
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c8/28253f165513c9f035c1e5b2a3f366/.command.sh
Size: 299 bytes
Task: GERMLINE_CNV:AggregateBatchPerSampleData (1136_5X1-N1-BDNA-1_A23NLN3LT4_1)
Attempt

Content

#!/bin/bash -Ceuo pipefail
cnv_pipe aggregate-sample-data \
    1136_5X1-N1-BDNA-1_A23NLN3LT4_1 \
    clusters/ \
    counts_1.parquet \
    altera_v3_panel.bed \
    altera_v3_blacklist.bed \
    clustered_panel.csv \
    ploidy_1.parquet \
    1136_5X1-N1-BDNA-1_A23NLN3LT4_1_probe_sample.parquet