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==> STAGING COMPLETE (5325 inputs)
mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-ll9lclz2 because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-03 08:27:57,529 - cnv_pipe.cnv_pipe.batch.agg - INFO - Aggregating data for sample 1136_1XP-N1-BDNA-1_A23NLN3LT4_1
2026-06-03 08:27:57,536 - cnv_pipe.cnv_pipe.batch.agg - INFO - Found 2659 clusters in clusters/