mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-nli07d11 because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-03 05:27:41,701 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-03 05:27:42,533 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-03 05:27:42,714 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-03 05:28:37,712 - cnv_pipe.batch.run_model - INFO - Loaded data with 236 samples
2026-06-03 05:28:37,878 - cnv_pipe.batch.run_model - INFO - Processing cluster 996 with 176 probes
2026-06-03 05:28:38,418 - cnv_pipe.batch.run_model.cluster996 - INFO - Child process started for cluster 996 with 176 probes
2026-06-03 05:34:06,822 - cnv_pipe.batch.run_model.cluster996 - INFO - Child process finished cluster 996. Wrote cluster_996_samples.csv and cluster_996_params.csv
2026-06-03 05:34:06,825 - cnv_pipe.batch.run_model - INFO - Cluster 996 finished in 328.95 seconds. Status: SUCCESS