File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cc/9c4039b99eb73de3b4822de8506eaf/.command.err
Size
1.3 KB
Attempt
mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-umdws0e7 because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-03 05:26:45,136 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-03 05:26:45,951 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-03 05:26:46,117 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-03 05:27:38,699 - cnv_pipe.batch.run_model - INFO - Loaded data with 236 samples
2026-06-03 05:27:38,960 - cnv_pipe.batch.run_model - INFO - Processing cluster 796 with 188 probes
2026-06-03 05:27:39,326 - cnv_pipe.batch.run_model.cluster796 - INFO - Child process started for cluster 796 with 188 probes
2026-06-03 05:33:12,129 - cnv_pipe.batch.run_model.cluster796 - INFO - Child process finished cluster 796. Wrote cluster_796_samples.csv and cluster_796_params.csv
2026-06-03 05:33:12,131 - cnv_pipe.batch.run_model - INFO - Cluster 796 finished in 333.17 seconds. Status: SUCCESS