.command.log - Workdir - GERMLINE_CNV:ClusterPanelRegions (B23H3TCLT3)

File Info

Filename: .command.log
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f5/e1a5b8f2f98b00f2a578c316c08f79/.command.log
Size: 996 bytes
Task: GERMLINE_CNV:ClusterPanelRegions (B23H3TCLT3)
Attempt

Content

  Downloading: s3://natera-platform-sandbox/platform_projects/horizon_cnv/fixtures/MANE.GRCh38.v1.4.ensembl_genomic.gff
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f5/e1a5b8f2f98b00f2a578c316c08f79/.command.sh
  Downloading: s3://natera-platform-sandbox/platform_projects/altera_cnv/altera_v3_panel.bed
  Downloading: s3://natera-platform-sandbox/ref/hs38/GCA_000001405.15_GRCh38_no_alt_analysis_set.fna.gz.fai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f5/e1a5b8f2f98b00f2a578c316c08f79/.command.run
==> STAGING COMPLETE (5 inputs)

mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-pp4_z3oj because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.