File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c2/28c76cb03fc187431b8490f6346b18/.command.err
Size
1.3 KB
Attempt
mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-pflzq548 because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-03 05:11:17,808 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-03 05:11:18,747 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-03 05:11:18,934 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-03 05:11:36,119 - cnv_pipe.batch.run_model - INFO - Loaded data with 68 samples
2026-06-03 05:11:36,215 - cnv_pipe.batch.run_model - INFO - Processing cluster 1555 with 185 probes
2026-06-03 05:11:36,808 - cnv_pipe.batch.run_model.cluster1555 - INFO - Child process started for cluster 1555 with 185 probes
2026-06-03 05:14:45,449 - cnv_pipe.batch.run_model.cluster1555 - INFO - Child process finished cluster 1555. Wrote cluster_1555_samples.csv and cluster_1555_params.csv
2026-06-03 05:14:45,451 - cnv_pipe.batch.run_model - INFO - Cluster 1555 finished in 189.24 seconds. Status: SUCCESS