File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e8/6875b6c0f8dcd49b7d5569b16d0a1d/.command.err
Size
1.3 KB
Attempt
mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-4ian27ya because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-03 05:11:09,994 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-03 05:11:10,990 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-03 05:11:11,185 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-03 05:11:29,951 - cnv_pipe.batch.run_model - INFO - Loaded data with 68 samples
2026-06-03 05:11:30,215 - cnv_pipe.batch.run_model - INFO - Processing cluster 1501 with 168 probes
2026-06-03 05:11:30,685 - cnv_pipe.batch.run_model.cluster1501 - INFO - Child process started for cluster 1501 with 168 probes
2026-06-03 05:14:23,053 - cnv_pipe.batch.run_model.cluster1501 - INFO - Child process finished cluster 1501. Wrote cluster_1501_samples.csv and cluster_1501_params.csv
2026-06-03 05:14:23,055 - cnv_pipe.batch.run_model - INFO - Cluster 1501 finished in 172.84 seconds. Status: SUCCESS