File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8a/258d215ae36fbbaef371ac654b5245/.command.err
Size
1.3 KB
Attempt
mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-1wakxb0z because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-03 05:06:30,392 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-03 05:06:31,426 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-03 05:06:31,628 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-03 05:06:50,046 - cnv_pipe.batch.run_model - INFO - Loaded data with 68 samples
2026-06-03 05:06:50,149 - cnv_pipe.batch.run_model - INFO - Processing cluster 119 with 192 probes
2026-06-03 05:06:50,782 - cnv_pipe.batch.run_model.cluster119 - INFO - Child process started for cluster 119 with 192 probes
2026-06-03 05:10:34,572 - cnv_pipe.batch.run_model.cluster119 - INFO - Child process finished cluster 119. Wrote cluster_119_samples.csv and cluster_119_params.csv
2026-06-03 05:10:34,575 - cnv_pipe.batch.run_model - INFO - Cluster 119 finished in 224.43 seconds. Status: SUCCESS