Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3b/5fb84b9b25028695977080974e1a0c/counts_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3b/5fb84b9b25028695977080974e1a0c/ploidy_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4d/86887286c60e0ec78f76ef509ef74d/clustered_panel.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3b/5fb84b9b25028695977080974e1a0c/sample_metrics_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7a/e63563a409369785de1bc8058f4c87/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7a/e63563a409369785de1bc8058f4c87/.command.run
==> STAGING COMPLETE (6 inputs)

mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-k1su5s6p because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-03 05:10:04,295 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-03 05:10:05,119 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-03 05:10:05,289 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-03 05:10:20,642 - cnv_pipe.batch.run_model - INFO - Loaded data with 68 samples
2026-06-03 05:10:20,724 - cnv_pipe.batch.run_model - INFO - Processing cluster 1137 with 199 probes
2026-06-03 05:10:21,133 - cnv_pipe.batch.run_model.cluster1137 - INFO - Child process started for cluster 1137 with 199 probes
2026-06-03 05:13:57,327 - cnv_pipe.batch.run_model.cluster1137 - INFO - Child process finished cluster 1137. Wrote cluster_1137_samples.csv and cluster_1137_params.csv
2026-06-03 05:13:57,330 - cnv_pipe.batch.run_model - INFO - Cluster 1137 finished in 216.61 seconds. Status: SUCCESS