mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-zb5r_jt0 because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-03 05:06:19,682 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-03 05:06:20,632 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-03 05:06:20,835 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-03 05:06:38,129 - cnv_pipe.batch.run_model - INFO - Loaded data with 68 samples
2026-06-03 05:06:38,229 - cnv_pipe.batch.run_model - INFO - Processing cluster 70 with 177 probes
2026-06-03 05:06:38,821 - cnv_pipe.batch.run_model.cluster70 - INFO - Child process started for cluster 70 with 177 probes
2026-06-03 05:09:51,825 - cnv_pipe.batch.run_model.cluster70 - INFO - Child process finished cluster 70. Wrote cluster_70_samples.csv and cluster_70_params.csv
2026-06-03 05:09:51,828 - cnv_pipe.batch.run_model - INFO - Cluster 70 finished in 193.60 seconds. Status: SUCCESS