Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3b/5fb84b9b25028695977080974e1a0c/counts_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3b/5fb84b9b25028695977080974e1a0c/ploidy_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4d/86887286c60e0ec78f76ef509ef74d/clustered_panel.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3b/5fb84b9b25028695977080974e1a0c/sample_metrics_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5c/b46d834314d56d2a3bb470e840771a/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5c/b46d834314d56d2a3bb470e840771a/.command.run
==> STAGING COMPLETE (6 inputs)

mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-5fu2jcv5 because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-03 05:09:18,989 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-03 05:09:20,013 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-03 05:09:20,211 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-03 05:09:38,689 - cnv_pipe.batch.run_model - INFO - Loaded data with 68 samples
2026-06-03 05:09:38,794 - cnv_pipe.batch.run_model - INFO - Processing cluster 914 with 139 probes
2026-06-03 05:09:39,272 - cnv_pipe.batch.run_model.cluster914 - INFO - Child process started for cluster 914 with 139 probes
2026-06-03 05:12:09,150 - cnv_pipe.batch.run_model.cluster914 - INFO - Child process finished cluster 914. Wrote cluster_914_samples.csv and cluster_914_params.csv
2026-06-03 05:12:09,151 - cnv_pipe.batch.run_model - INFO - Cluster 914 finished in 150.36 seconds. Status: SUCCESS