File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2e/c56eb4b4d2bf3b36797d9b0f7a52a7/.command.err
Size
1.3 KB
Attempt
mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-0mvqvehv because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-03 05:09:58,962 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-03 05:09:59,894 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-03 05:10:00,072 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-03 05:10:16,415 - cnv_pipe.batch.run_model - INFO - Loaded data with 68 samples
2026-06-03 05:10:16,653 - cnv_pipe.batch.run_model - INFO - Processing cluster 1101 with 190 probes
2026-06-03 05:10:17,067 - cnv_pipe.batch.run_model.cluster1101 - INFO - Child process started for cluster 1101 with 190 probes
2026-06-03 05:13:31,959 - cnv_pipe.batch.run_model.cluster1101 - INFO - Child process finished cluster 1101. Wrote cluster_1101_samples.csv and cluster_1101_params.csv
2026-06-03 05:13:31,960 - cnv_pipe.batch.run_model - INFO - Cluster 1101 finished in 195.31 seconds. Status: SUCCESS