Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3b/5fb84b9b25028695977080974e1a0c/counts_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3b/5fb84b9b25028695977080974e1a0c/ploidy_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4d/86887286c60e0ec78f76ef509ef74d/clustered_panel.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3b/5fb84b9b25028695977080974e1a0c/sample_metrics_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d2/2ee9a31f8216bc3739451cb78be14c/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d2/2ee9a31f8216bc3739451cb78be14c/.command.run
==> STAGING COMPLETE (6 inputs)

mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-fwd33vb4 because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-03 05:08:45,967 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-03 05:08:46,822 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-03 05:08:47,003 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-03 05:09:03,335 - cnv_pipe.batch.run_model - INFO - Loaded data with 68 samples
2026-06-03 05:09:03,428 - cnv_pipe.batch.run_model - INFO - Processing cluster 790 with 185 probes
2026-06-03 05:09:04,009 - cnv_pipe.batch.run_model.cluster790 - INFO - Child process started for cluster 790 with 185 probes
2026-06-03 05:12:29,089 - cnv_pipe.batch.run_model.cluster790 - INFO - Child process finished cluster 790. Wrote cluster_790_samples.csv and cluster_790_params.csv
2026-06-03 05:12:29,091 - cnv_pipe.batch.run_model - INFO - Cluster 790 finished in 205.66 seconds. Status: SUCCESS