File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e4/01454eeb0b396f72eec2dd6cc67aa6/.command.err
Size
1.3 KB
Attempt
mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-tzb90eq4 because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-03 05:10:03,203 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-03 05:10:04,081 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-03 05:10:04,277 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-03 05:10:34,200 - cnv_pipe.batch.run_model - INFO - Loaded data with 68 samples
2026-06-03 05:10:34,438 - cnv_pipe.batch.run_model - INFO - Processing cluster 1131 with 188 probes
2026-06-03 05:10:34,839 - cnv_pipe.batch.run_model.cluster1131 - INFO - Child process started for cluster 1131 with 188 probes
2026-06-03 05:14:05,494 - cnv_pipe.batch.run_model.cluster1131 - INFO - Child process finished cluster 1131. Wrote cluster_1131_samples.csv and cluster_1131_params.csv
2026-06-03 05:14:05,498 - cnv_pipe.batch.run_model - INFO - Cluster 1131 finished in 211.06 seconds. Status: SUCCESS