File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b4/2dd138aebb1610b7572ecb96479fcc/.command.err
Size
1.3 KB
Attempt
mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-c2bpscw8 because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-03 05:10:16,229 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-03 05:10:17,217 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-03 05:10:17,421 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-03 05:10:34,992 - cnv_pipe.batch.run_model - INFO - Loaded data with 68 samples
2026-06-03 05:10:35,263 - cnv_pipe.batch.run_model - INFO - Processing cluster 1199 with 173 probes
2026-06-03 05:10:35,711 - cnv_pipe.batch.run_model.cluster1199 - INFO - Child process started for cluster 1199 with 173 probes
2026-06-03 05:13:47,062 - cnv_pipe.batch.run_model.cluster1199 - INFO - Child process finished cluster 1199. Wrote cluster_1199_samples.csv and cluster_1199_params.csv
2026-06-03 05:13:47,064 - cnv_pipe.batch.run_model - INFO - Cluster 1199 finished in 191.80 seconds. Status: SUCCESS