File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/30/36554a0cdd31e1c7814bde325fca0f/.command.err
Size
1.3 KB
Attempt
mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-luop0_qe because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-03 05:10:30,004 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-03 05:10:31,032 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-03 05:10:31,234 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-03 05:10:49,143 - cnv_pipe.batch.run_model - INFO - Loaded data with 68 samples
2026-06-03 05:10:49,237 - cnv_pipe.batch.run_model - INFO - Processing cluster 1268 with 194 probes
2026-06-03 05:10:49,706 - cnv_pipe.batch.run_model.cluster1268 - INFO - Child process started for cluster 1268 with 194 probes
2026-06-03 05:14:22,275 - cnv_pipe.batch.run_model.cluster1268 - INFO - Child process finished cluster 1268. Wrote cluster_1268_samples.csv and cluster_1268_params.csv
2026-06-03 05:14:22,277 - cnv_pipe.batch.run_model - INFO - Cluster 1268 finished in 213.04 seconds. Status: SUCCESS