File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c2/3d434ce09dcf1d77108eaacf840e36/.command.err
Size
1.3 KB
Attempt
mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-8hoqc7un because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-03 05:08:46,480 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-03 05:08:47,354 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-03 05:08:47,532 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-03 05:09:04,041 - cnv_pipe.batch.run_model - INFO - Loaded data with 68 samples
2026-06-03 05:09:04,280 - cnv_pipe.batch.run_model - INFO - Processing cluster 816 with 175 probes
2026-06-03 05:09:04,699 - cnv_pipe.batch.run_model.cluster816 - INFO - Child process started for cluster 816 with 175 probes
2026-06-03 05:12:22,324 - cnv_pipe.batch.run_model.cluster816 - INFO - Child process finished cluster 816. Wrote cluster_816_samples.csv and cluster_816_params.csv
2026-06-03 05:12:22,326 - cnv_pipe.batch.run_model - INFO - Cluster 816 finished in 198.05 seconds. Status: SUCCESS